Details
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Type:
Improvement
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Status: Open
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Component/s: file format issue, printing and export
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Labels:None
Description
Inspired [~rstuder]'s thread:
http://www.jalview.org/pipermail/jalview-discuss/2018-November/001514.html
Jalview supports visualisation of a number of dynamic positional calculations (ie colour schemes), in addition to visualisation of per-residue scores imported via T-Coffee score files or per-sequence annotation rows.
Such alignment properties could be useful in downstream analyses, but can currently only be exported via groovy script (for conservation/blosum based scores - see thread), or annotation file. Ideally, we should also support (re)-generation of a T-Coffee score file and/or a standard labelled matrix format (or even just TSV) suitable for import to downstream data analysis tools.
http://www.jalview.org/pipermail/jalview-discuss/2018-November/001514.html
Jalview supports visualisation of a number of dynamic positional calculations (ie colour schemes), in addition to visualisation of per-residue scores imported via T-Coffee score files or per-sequence annotation rows.
Such alignment properties could be useful in downstream analyses, but can currently only be exported via groovy script (for conservation/blosum based scores - see thread), or annotation file. Ideally, we should also support (re)-generation of a T-Coffee score file and/or a standard labelled matrix format (or even just TSV) suitable for import to downstream data analysis tools.