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  1. Jalview
  2. JAL-3139

Colocated features can be incorrectly filtered from display

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.11.0
    • Component/s: None
    • Labels:

      Description

      Seen when a position has both dbSNP and VCF sequence_variant feature, and only VCF group is shown.
      Method FeatureRendererModel.filterFeaturesForDisplay() removes the VCF feature as 'redundant' for colouring, but doesn't check group visibility, and the 'retained' dbSNP feature is not shown, leaving no feature colour drawn (note the tooltip is still correct, as coded differently).

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          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2816 Exclude filtered features from display in Tooltip and other functions

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2593 Avoid redundant rendering of co-located features

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated:
                Resolved: