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  1. Jalview
  2. JAL-3077

Capture correct accession version when retrieving from Ensembl

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    Details

    • Type: Improvement
    • Status: In Progress
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.10.4b1, 2.11.0, 2.11.2.6, 2.11.3.0
    • Fix Version/s: 2.11.1, 2.12.0
    • Component/s: data retrieval services, jvdesktop
    • Labels:
      None

      Description

      Jalview currently creates a 'self' DBRefEntry for Ensembl accessions with version equal to Ensembl's data version (currently 95). It should instead use the version number for the specific accession.

        Attachments

          Issue Links

          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-3076 Gene retrieval from Ensembl 7.0 fails to add features

          • Major - Major loss of function.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2353 ignore sequence version numbers in IDs when resolving database references

          • Blocker - Blocks development and/or testing work, production could not run.
          • Being documented

          Task - A task that needs to be done. JAL-2105 Capture Ensembl data version, check REST version

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              gmungoc Mungo Carstairs
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              Watchers:
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                Dates

                Created:
                Updated: