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  1. Jalview
  2. JAL-3017

Cannot import features with multiple variation elements for records from Uniprot

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.10.4
    • Fix Version/s: 2.10.4b1
    • Labels:
      None

      Description

      Retrieval of P05067 fails with the following error:
      Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@5351df39
      INFO : org.exolab.castor.mapping.Mapping - Loading mapping descriptors from jar:file:/Users/jprocter/anaconda/share/jalview-2.10.4-0/jalview.jar!/uniprot_mapping.xml
      INFO - Loading mapping descriptors from jar:file:/Users/jprocter/anaconda/share/jalview-2.10.4-0/jalview.jar!/uniprot_mapping.xml
      Error getUniprotEntries() element "variation" occurs more than once. (parent class: jalview.datamodel.xdb.uniprot.UniprotFeature)
       location: /feature/feature/feature/variation{File: [not available]; line: 7363; column: 25}
      Error getUniprotEntries() element "variation" occurs more than once. (parent class: jalview.datamodel.xdb.uniprot.UniprotFeature)
       location: /feature/feature/feature/variation{File: [not available]; line: 7363; column: 25}

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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