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  1. Jalview
  2. JAL-2955

automatically import and align cross-referenced Pfam alignments

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.11.1
    • Labels:
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      Description

      Pfam alignments are a good starting point for detailed sequence conservation analysis, and it would be useful to be able to automatically retrieve the Pfam seed and HMM from crossreferences on Uniprot sequences, and visualise them aligned to the original sequence. The alignments could be shown in separate windows, and in the original alignment, the sequence annotated with derived profile scores.

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Created:
              Updated: