Details
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Type:
Bug
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Status: Closed
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Priority:
Critical
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Resolution: Fixed
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Affects Version/s: None
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Fix Version/s: 2.10.4
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Component/s: analysis, renderer, Structures
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Labels:None
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Environment:Java version: 1.8.0_144
x86_64 Mac OS X 10.10.5
Description
Originally noticed with attached PDB file (generated with CONSURF).
1. Ensure 'Add temperature factor' is enabled and load attached pdb file
2. Select Colour->By Annotation, and temperature factor.
3. change the min-colour for the colour gradient to white.
4. Attempt to hit OK.
Exception raised is:
Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: Color parameter outside of expected range: Green Blue
at java.awt.Color.testColorValueRange(Color.java:310)
at java.awt.Color.<init>(Color.java:395)
at java.awt.Color.<init>(Color.java:369)
at jalview.schemes.AnnotationColourGradient.shadeCalculation(AnnotationColourGradient.java:442)
at jalview.schemes.AnnotationColourGradient.findColour(AnnotationColourGradient.java:390)
at jalview.schemes.ResidueColourScheme.findColour(ResidueColourScheme.java:120)
at jalview.renderer.ResidueShader.findColour(ResidueShader.java:251)
at jalview.renderer.ResidueColourFinder.getBoxColour(ResidueColourFinder.java:151)
at jalview.gui.SequenceRenderer.drawBoxes(SequenceRenderer.java:197)
at jalview.gui.SequenceRenderer.drawSequence(SequenceRenderer.java:132)
at jalview.gui.SeqCanvas.draw(SeqCanvas.java:1114)
at jalview.gui.SeqCanvas.drawPanel(SeqCanvas.java:1030)
at jalview.gui.SeqCanvas.paintComponent(SeqCanvas.java:412)
1. Ensure 'Add temperature factor' is enabled and load attached pdb file
2. Select Colour->By Annotation, and temperature factor.
3. change the min-colour for the colour gradient to white.
4. Attempt to hit OK.
Exception raised is:
Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: Color parameter outside of expected range: Green Blue
at java.awt.Color.testColorValueRange(Color.java:310)
at java.awt.Color.<init>(Color.java:395)
at java.awt.Color.<init>(Color.java:369)
at jalview.schemes.AnnotationColourGradient.shadeCalculation(AnnotationColourGradient.java:442)
at jalview.schemes.AnnotationColourGradient.findColour(AnnotationColourGradient.java:390)
at jalview.schemes.ResidueColourScheme.findColour(ResidueColourScheme.java:120)
at jalview.renderer.ResidueShader.findColour(ResidueShader.java:251)
at jalview.renderer.ResidueColourFinder.getBoxColour(ResidueColourFinder.java:151)
at jalview.gui.SequenceRenderer.drawBoxes(SequenceRenderer.java:197)
at jalview.gui.SequenceRenderer.drawSequence(SequenceRenderer.java:132)
at jalview.gui.SeqCanvas.draw(SeqCanvas.java:1114)
at jalview.gui.SeqCanvas.drawPanel(SeqCanvas.java:1030)
at jalview.gui.SeqCanvas.paintComponent(SeqCanvas.java:412)