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  1. Jalview
  2. JAL-2947

Retrieve Uniprot entries for imported PDB structures

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    Details

    • Type: New Feature
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: 2.11.0
    • Component/s: Structures
    • Labels:

      Description

      Whilst the PDB sequence fetcher option is useful, having retrieved a PDB file, there is then no way to traverse other data sources such as uniprot protein sequences associated with PDB records.

      It would be useful to be able to:
      1. retrieve and show cross-references (which in this case are 1:1 mappings, ie PDB chain->protein/nucleotide sequence) for PDB chain sequences in a view

      2. Retrieve and show Uniprot and Nucleotide sequences for one or more PDB Entries directly from the PDB sequence fetcher.

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated: