Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-2830

EditCommand Replace (on gapped sequence) mangles dataset sequence

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.11.0
    • Component/s: None
    • Labels:
      None

      Description

      Example:
      >seq
      ABC--DEF
      select C- and replace with XYZ.
      The aligned sequence changes to ABXYZ-DEF - correct.
      Inspection in the debugger shows the dataset sequence is now ABXYZF - wrong.

        Attachments

          Issue Links

          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2541 Delete/Cut selection doesn't relocate sequence features correctly when start of sequence is removed

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2829 Sequence.deleteChars (including gaps) makes incorrect new dataset sequence

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              gmungoc Mungo Carstairs
              Votes:
              0 Vote for this issue
              Watchers:
              2 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: