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  1. Jalview
  2. JAL-2765

Short isoforms from Ensembl are expanded to full length Uniprot sequences

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.10.2
    • Fix Version/s: 2.11.0
    • Component/s: Datamodel
    • Labels:

      Description

      Retrieve ACTR8 from Ensembl and show products. Now fetch db refs for all sequences from uniprot and ensure that 'Trim sequences' is not set. Jalview helpfully says:
      Your sequences have been verified against known sequence databases.
      (Use Calculate | Show flanking regions to show enclosing sequence.)
      To preserve data changes, save your alignment.

      Sequence for ENSP00000419429 expanded from ARP8_HUMAN

      Whilst that's great, ENSP..419429 is ACTR8-202 - which is shorter (and should be left as such).

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated: