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  1. Jalview
  2. JAL-2642

Feature colour specification of 'lightGrey' causes exceptions in older versions of Jalview

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.10.1
    • Fix Version/s: 2.10.2
    • Component/s: file format issue
    • Labels:
      None

      Description

      The current exampleFeatures.txt file cannot be loaded onto old (2.10.1 or earlier) versions of Jalview. An exception is thrown:
      GAMMA-TURN-CLASSIC lightGray
      java.lang.IllegalArgumentException: Invalid colour descriptor: lightGray
      at jalview.schemes.FeatureColour.parseJalviewFeatureColour(FeatureColour.java:127)
      at jalview.io.FeaturesFile.parse(FeaturesFile.java:239)
      at jalview.controller.AlignViewController.parseFeaturesFile(AlignViewController.java:379)
      at jalview.gui.AlignFrame.parseFeaturesFile(AlignFrame.java:4787)
      at jalview.gui.AlignFrame.loadJalviewDataFile(AlignFrame.java:5084)
      at jalview.gui.AlignFrame.associatedData_actionPerformed(AlignFrame.java:1451)

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          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2365 Colour spec of lightGray or darkGray is not respected

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2500 minor differences in topology for computed trees compared with older versions of Jalview

          • Trivial - Cosmetic problem like misspelt words or misaligned text.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Created:
                Updated:
                Resolved: