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  1. Jalview
  2. JAL-2579

Sequences deleted via Remove redundancy are not shown as unlinked in associated tree

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Cannot Reproduce
    • Affects Version/s: 2.10.2
    • Fix Version/s: 2.10.2
    • Component/s: analysis, gui
    • Labels:

      Description

      If a sequence is deleted from an alignment after a tree is calculated, and 'Mark unlinked leaves' is shown, then an asterisk is shown next to the leave to indicate it has no sequence.

      If the remove redundancy (CMD/CTRL D) dialog is used to remove sequences, the tree does not show asterisks. This doesn't appear to be a redraw issue, and deleting other sequences manually doesn't make the tree window wake up and mark all the removed sequences as missing.

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            Assignee:
            jprocter Jim Procter
            Reporter:
            tva Thomas van Aalten
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              Dates

              Created:
              Updated:
              Resolved: