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  1. Jalview
  2. JAL-2556

New package for Uniprot data binding classes

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    Details

    • Type: Task
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.2
    • Component/s: data retrieval services
    • Labels:
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      Description

      Classes jalview.datamodel.UniprotFile, UniprotEntry, UniprotSequence, UniprotProteinName are only used for binding retrieved XML (via uniprot_mapping.xml). They should be in a separate package jalview.datamodel.xdb.uniprot (following the pattern set by jalview.datamodel.xdb.embl).

      This is driven by the need to create a new binding class UniprotFeature, distinct from SequenceFeature. This is needed to complete JAL-2505 (make key fields of SequenceFeature final).

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          Task - A task that needs to be done. JAL-2505 Make 'key' members of SequenceFeature final

          • Major - Major loss of function.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Updated:
                Resolved: