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  1. Jalview
  2. JAL-2535

parse posterior probabilities in stockholm files

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      Description

      Stockholm files support 'PP' or 'posterior probability' in GR annotation lines to encode local model fitness posterior probabilities:
      From http://sonnhammer.sbc.su.se/Stockholm.html

      PP Posterior Probability [0-9*]
                    (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00)

      (GC lines allow PP_cons).

      These are output by other tools, including RNAlien (see e.g. http://rna.tbi.univie.ac.at/rnalien_static/cm26140/result.stockholm ).

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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