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  1. Jalview
  2. JAL-2465

No mapping generated for 3D Structures loaded in Jmol via URL

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.10.1
    • Fix Version/s: 2.10.2
    • Component/s: Structures
    • Labels:
      None

      Description

      I initially thought this bug was specific to Phyre2 model structures, however further tracking shows it happens for all structures and also affects version 2.10.1.

      Follow the steps below to reproduce bug:
       - set structure viewer to JMOL
       - load any 3D structure file from URL e.g. http://www.ebi.ac.uk/pdbe/entry-files/pdb1a70.ent
       - view the 3D structure for the added sequence from Cached Option of the Structure Chooser

      Outcome:
      Jmol launches and displays the structure - however, no mapping is generated hence the displayed structure is grayed out and cannot communicate with the alignment window.
      With Chimera, mapping is created successfully.

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          Issue Links

          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2275 Cannot view local structures imported via direct network mount (e.g. cifs/samba, onedrive, etc)

          • Blocker - Blocks development and/or testing work, production could not run.
          • Being documented

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2520 Download structures loaded via URL before parsing

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              tcnofoegbu Tochukwu Charles N Ofoegbu
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                Dates

                Created:
                Updated:
                Resolved: