Details
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Type:
Bug
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Status: Open
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Priority:
Minor
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Resolution: Unresolved
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Affects Version/s: 2.10.1
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Fix Version/s: None
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Component/s: Test suite
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Labels:None
Description
testSingleSeqViewChimera throws the following exceptions (truncated output):
ALL CLOSED
## Chimera log: Exception when trying to open model /Users/kmourao/jalview/jalview/examples/1gaq.txt
java.lang.NullPointerException
java.lang.NullPointerException
at jalview.ext.rbvi.chimera.JalviewChimeraBinding.openFile(JalviewChimeraBinding.java:157)
at jalview.gui.ChimeraViewFrame.run(ChimeraViewFrame.java:475)
at java.lang.Thread.run(Thread.java:745)
ERROR: jalview.bin.Jalview - Couldn't open /Users/kmourao/jalview/jalview/examples/1gaq.txt in Chimera viewer!
java.lang.NullPointerException
at jalview.gui.ChimeraViewFrame.run(ChimeraViewFrame.java:476)
at java.lang.Thread.run(Thread.java:745)
ERROR - Couldn't open /Users/kmourao/jalview/jalview/examples/1gaq.txt in Chimera viewer!
java.lang.NullPointerException
at jalview.gui.ChimeraViewFrame.run(ChimeraViewFrame.java:476)
at java.lang.Thread.run(Thread.java:745)
If stepping through the code slowly these exceptions do not occur, so possibly some sort of closing down synchronisation issue.
ALL CLOSED
## Chimera log: Exception when trying to open model /Users/kmourao/jalview/jalview/examples/1gaq.txt
java.lang.NullPointerException
java.lang.NullPointerException
at jalview.ext.rbvi.chimera.JalviewChimeraBinding.openFile(JalviewChimeraBinding.java:157)
at jalview.gui.ChimeraViewFrame.run(ChimeraViewFrame.java:475)
at java.lang.Thread.run(Thread.java:745)
ERROR: jalview.bin.Jalview - Couldn't open /Users/kmourao/jalview/jalview/examples/1gaq.txt in Chimera viewer!
java.lang.NullPointerException
at jalview.gui.ChimeraViewFrame.run(ChimeraViewFrame.java:476)
at java.lang.Thread.run(Thread.java:745)
ERROR - Couldn't open /Users/kmourao/jalview/jalview/examples/1gaq.txt in Chimera viewer!
java.lang.NullPointerException
at jalview.gui.ChimeraViewFrame.run(ChimeraViewFrame.java:476)
at java.lang.Thread.run(Thread.java:745)
If stepping through the code slowly these exceptions do not occur, so possibly some sort of closing down synchronisation issue.