Details
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Type: Bug
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Status: Open
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Priority: Minor
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Resolution: Unresolved
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Affects Version/s: 2.10.1
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Fix Version/s: None
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Component/s: file format issue
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Labels:None
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Environment:macOS 10.12.3
Description
Using MUSCLE v3.8.31, a command line this will produce a Clustal-like alignment which Jalview 2.10.1 fails to load:
$ muscle -in example.fasta -clw -out example.aln
$ head -n 1 example.aln
MUSCLE (3.8) multiple sequence alignment
Using Muscle's strict Clustal alignment mode works:
$ muscle -in example.fasta -clwstrict -out example.aln
$ head -n 1 example.aln
CLUSTAL W (1.81) multiple sequence alignment
$ muscle -in example.fasta -clw -out example.aln
$ head -n 1 example.aln
MUSCLE (3.8) multiple sequence alignment
Using Muscle's strict Clustal alignment mode works:
$ muscle -in example.fasta -clwstrict -out example.aln
$ head -n 1 example.aln
CLUSTAL W (1.81) multiple sequence alignment
Attachments
Issue Links
- related with
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JAL-2445 More robust parser selection strategy for input data
- Open