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  1. Jalview
  2. JAL-2434

Superposition of FER1_MAIZE to FER1_SPIOL fails for SIFTS + Chimera

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    Details

    • Type: Bug
    • Status: In Progress
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.10.1
    • Fix Version/s: None
    • Component/s: Structures
    • Labels:
      None

      Description

      Configure SIFTS mapping and Chimera viewer.
      Load uniref50.fa and view FER1_SPIOL / 1a70.
      Add FER1_MAIZE / 5h92 to the same structure viewer.
      No structure superposition happens.

        Attachments

        1. c4n58A_.1.pdb
          55 kB
          Tochukwu Charles N Ofoegbu
        2. d1a70a_.2.pdb
          57 kB
          Tochukwu Charles N Ofoegbu
        3. jmolBeforeAndAfter.png
          148 kB
          Mungo Carstairs

          Issue Links

          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2463 StringIndexOutOfBoundsException while attempting to build Jmol Colour command for Phyre2 model structure

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2319 View Mappings has ranges swapped for SIFTS mappings, and mappings are made to 'Not_Observed' residue

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

            Activity

              People

              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated: