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  1. Jalview
  2. JAL-2398

Blosum62 C->R is 3, should be -3

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.10.1
    • Fix Version/s: 2.10.2
    • Component/s: None
    • Labels:
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      Description

      ResidueProperties.BLOSUM62[4][1] has the value 3, this should be -3.
      See for instance
      https://www.ncbi.nlm.nih.gov/Class/FieldGuide/BLOSUM62.txt

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          Task - A task that needs to be done. JAL-2397 Correct PCA (Jalview/SeqSpace) and substitution matrix based tree treatment of gap scores

          • Major - Major loss of function.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Created:
                Updated:
                Resolved: