Details
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Type: Task
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Status: Open
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Priority: Blocker
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Component/s: Structures
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Labels:None
Description
Can these be used in place of enum PDBEntry.Type?
Need to review:
1) Type enum includes FILE as a value - unclear how this is used
2) Type enum fields ext (e.g "cif") and format (e.g. "mmcif") have specific uses (for Chimera Open command, and dbfetch, respectively) - would need to decouple these values from the FileFormat properties
3) PDBEntry.type is a String which can be set directly or via a Type enum - code design needs to be clearer here e.g.
- Uniprot.uniprotEntryToSequenceI() tests for "EMBL" or "Ensembl" - are these ever set? if so it suggests a separate property rather than overloading the meaning of PDBEntry.type
Attachments
Issue Links
- related with
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JAL-2344 Refactor file format options as interfaces instead of text strings
- Closed