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  1. Jalview
  2. JAL-239

JNet error state not detected (blastpgp failure)

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Minor
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: web service bug
    • Labels:
      None
    • Mantis ID:
      16917

      Description

      Job Id
      ---
      Job still running
      ** Vamsas@Dundee University Life Sciences Bioinformatics Cluster Job **
      ** New Public Job Limits are 1 hour of CPU time and 1G of memory.
      **

      --/homes/www-jpred/bin/webrun --email --log /homes/www-jpred/public_html/results/jp_IiESMqW/LOG --sequence /homes/www-jpred/public_html/results/jp_IiESMqW/jp_IiESMqW.seq --format seq --id jp_IiESMqW
      --Started work on jp_IiESMqW.seq at Fri Oct 6 11:52:29 2006
      --On machine cluster-32-041.compbio.dundee.ac.uk
      --format = seq
      --Running PSIBLAST
      --/homes/www-jpred/bin/psiblast --query jp_IiESMqW.seq.fasta --profile jp_IiESMqW.seq.profile --blast jp_IiESMqW.seq.blast > jp_IiESMqW.seq.alignment
      [blastpgp] ERROR: Unable to open thread.
      [blastpgp] ERROR: Unable to open thread.
      Jpred failed
      psiblast had a problem:
      --at end

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            Assignee:
            Unassigned Unassigned
            Reporter:
            jprocter James Procter
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              Dates

              Created:
              Updated: