Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-2221

Pfam format parser will strip leading spaces from sequences where space is used as a gap character

    XMLWordPrintable

    Details

    • Type: Bug
    • Status: Open
    • Priority: Trivial
    • Resolution: Unresolved
    • Affects Version/s: 2.10.0
    • Fix Version/s: None
    • Component/s: file format issue
    • Labels:

      Description

      JAL-2175 knock-on - Pfam roundtripping fix means that leading whitespace is stripped from sequence data when text parsed by the Pfam parser.

      As a result, importing the following Pfam alignment removes the gap in sequence a:
      a analign
      b analig n
      c anali gn
      d anal ign
      e ana lign
      f an align
      g a nalign

        Attachments

          Issue Links

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
              Votes:
              0 Vote for this issue
              Watchers:
              1 Start watching this issue

                Dates

                Created:
                Updated: