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  1. Jalview
  2. JAL-2214

Distinguish between canonical and WC dominated base-pair patterns in StructureConsensus annotation

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.0
    • Component/s: analysis, na
    • Labels:
      None

      Description

      See JAL-1841 for full history.
      The Structure consensus histogram shows a '(' or a '[' to differentiate between valid and invalid base pair populations (although this was buggy in 2.9 - see JAL-1841). It could be more useful to also distinguish between WC, non-canonical and invalid dominated base-pair populations.

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          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-1841 RNA structure consensus is only calculated for base pairs marked with (), and counts are buggy

          • Major - Major loss of function.
          • Closed
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2215 Modifying the ignore gaps in consensus setting for a view doesn't refresh annotation panel

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: