[JAL-2211] Check for and debug use of jalview.datamodel.HiddenColumns.getFullAlignment() - Jalview

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Type: Task
Status: Closed
Priority: Blocker
Resolution: Cannot Reproduce
Affects Version/s: None
Fix Version/s: 2.11.0
Component/s: Datamodel
Labels:
- needsreview

Description

Noted in this comment:
http://issues.jalview.org/browse/JAL-1369?focusedCommentId=15577&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-15577

Dataset/alignment annotation properties will be lost if the AlignmentI from jalview.datamodel.HiddenColumns.getFullAlignment() is used for subsequent operations. Need to check through and fix any issues resulting from this method being used in the code.

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Assignee:: James Procter

Reporter:: James Procter

Votes:: 0 Vote for this issue

Watchers:: 2 Start watching this issue

Dates

Created:: 19/Sep/16 5:32 PM

Updated:: 12/Aug/19 2:13 PM

Resolved:: 09/Jul/19 5:37 PM