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  1. Jalview
  2. JAL-2207

Computed protein residue variants from Ensembl appear as 'null'

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Cannot Reproduce
    • Affects Version/s: 2.10.0
    • Fix Version/s: 2.11.0
    • Component/s: None
    • Labels:
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      Description

      Noticed after:
      1. retrieve example Ensembl ENSG00000157764
      2. show ENSEMBL crossrefs.
      Browse to around column 476 of protein panel - see
      p.Gly469null - takes you to
      http://www.ensembl.org/Homo_sapiens/Variation/Explore?r=7:140781103-140782103;v=rs121913357;vdb=variation;vf=23761128

      This variant is an N (ie ACGT). Perhaps the null arises because at least one of the codons is invalid ? (notes in variant indicates stop codons have been observed).

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Updated:
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