Details
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Type:
Task
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Status: Closed
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Priority:
Major
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Resolution: Incomplete
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Affects Version/s: None
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Fix Version/s: 2.10.0
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Component/s: Dev and Dep
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Labels:
Description
DBRefFetcher should be implemented in a way that it could be accessed from any part of the code given a sequence or list of sequences.
Currently it is constructed with an AlignFrame instance in order to:
- set IProgressIndicator
- obtain feature settings when DbSourceProxy[] is not supplied and
- check the alignment type (Nucleotide or Protein)
This prevents utilisation of DBRefFetcher in locations with no access to an AlignFrame instance.
Currently it is constructed with an AlignFrame instance in order to:
- set IProgressIndicator
- obtain feature settings when DbSourceProxy[] is not supplied and
- check the alignment type (Nucleotide or Protein)
This prevents utilisation of DBRefFetcher in locations with no access to an AlignFrame instance.
Attachments
Issue Links
- blocks
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JAL-1479 PDB<->Uniprot mappings from SIFTS
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- Closed
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