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  1. Jalview
  2. JAL-1926

Add source information for Sequences at retrieval

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    Details

    • Type: Improvement
    • Status: Closed
    • Priority: Major
    • Resolution: Won't Fix
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: Datamodel
    • Labels:
      None

      Description

      There is need to store the source information(i.e source db, accession, start, end etc) for sequences added to Jalview. This will potentially be very handy in many aspects of Jalview like SIFTS mapping, viewing sequence details, etc

      The DBRefEntry object can be reused for this by adding a reference to it in SequenceI interface.

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          Issue Links

          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-1479 PDB<->Uniprot mappings from SIFTS

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Task - A task that needs to be done. JAL-2106 change SequenceI.getSourceDBRef() to getPrimaryDBRefs()

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              tcnofoegbu Tochukwu Charles N Ofoegbu
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                Dates

                Created:
                Updated:
                Resolved: