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  1. Jalview
  2. JAL-1896

Clustalx, RNA Helices, and T-Coffee scores colour schemes are not restored from BioJSON

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 2.9
    • Fix Version/s: 2.9.0b1
    • Component/s: file format issue
    • Labels:
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      Description

      The aforementioned colour scheme do not have default constructors. They require an 'AnnotatedCollection' argument for construction which is why there are not being restored currently by BioJSON.

      I will add explicit checks for these colour schemes in BioJSON, and implement an appropriate construction where necessary.


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          Issue Links

          depends on

          New Feature - A new feature of the product, which has yet to be developed. JAL-1912 Enable BioJSON to store T-Coffee annotation and other per sequence annotations

          • Major - Major loss of function.
          • Closed
          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-2278 Improve BioJSON to support and preserve conservation colouring

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

            Activity

              People

              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              tcnofoegbu Tochukwu Charles N Ofoegbu
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                Dates

                Created:
                Updated:
                Resolved: