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  1. Jalview
  2. JAL-1828

Jmol reporting selenomethionines as X in sequence

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.9
    • Component/s: Structures
    • Labels:
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      Description

      The Jmol14/Jalview interface is extracting selenomethionines (MSE in PDB 3-letter codes) as X, which means Jalview cannot associate a PDB structure containing MSEs with the wild-type sequence (which where MSE == M).

      The ideal fix here is to find out how to get Jmol to report MSEs as methionine, but its probable we'll need some kind of translation table.

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            Assignee:
            gmungoc Mungo Carstairs
            Reporter:
            jprocter Jim Procter
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              Updated:
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