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  1. Jalview
  2. JAL-1827

incomplete sequence extracted from pdb entry 3a6s

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.8.2
    • Fix Version/s: 2.10.0
    • Component/s: Structures
    • Labels:

      Description

      Jalview's Jmol based PDB data processing pipeline doesn't retrieve the full length sequence from PDB entry 3a6s, even though Jmol and Chimera both render the coordinates of the first 36 or so residues.

      This structure includes a chain-break - its possible that Jalview is not correctly detecting and retrieving all fragments of the chain.

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          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-1479 PDB<->Uniprot mappings from SIFTS

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-2224 Structure's extracted sequence's start/end numbering misleading

          • Major - Major loss of function.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-2222 Cannot highlight last residue before a backbone chain break

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-1836 Error processing PDB 4q4h

          • Critical - Crashes, loss of data, severe memory leak.
          • Closed

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1759 update Jmol to latest version n: 14.2n

          • Major - Major loss of function.
          • Closed

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: