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  1. Jalview
  2. JAL-1797

amino acid physicochemical conservation is case dependent

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.10.0
    • Component/s: analysis
    • Labels:

      Description

      changing the case for some sequences in the conserved region of the ferredoxin alignment from upper to lower case causes the conservation property score for those regions to drop. The calculation ought to be case independent, but appears to not be at the moment.

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            Assignee:
            gmungoc Mungo Carstairs
            Reporter:
            jprocter James Procter
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