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  1. Jalview
  2. JAL-1755

NPE when showing group associated consensus calculation without sequence logos

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.9
    • Component/s: analysis
    • Labels:
      None

      Description

      Null pointer exceptions like :
      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at jalview.analysis.AAFrequency.completeConsensus(AAFrequency.java:314)
      at jalview.analysis.AAFrequency.completeConsensus(AAFrequency.java:240)
      at jalview.datamodel.SequenceGroup._updateConsensusRow(SequenceGroup.java:598)
      at jalview.datamodel.SequenceGroup.recalcConservation(SequenceGroup.java:521)
      at jalview.viewmodel.AlignmentViewport.updateGroupAnnotationSettings(AlignmentViewport.java:1950)
      at jalview.gui.AlignmentPanel.updateAnnotation(AlignmentPanel.java:1592)
      at jalview.gui.AlignmentPanel.updateAnnotation(AlignmentPanel.java:1586)
      at jalview.gui.AlignFrame.showGroupConsensus_actionPerformed(AlignFrame.java:5824)

      appear when enabling group consensus annotation rows in development build.

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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              Dates

              Created:
              Updated:
              Resolved: