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  1. Jalview
  2. JAL-1741

Colour schemes applied to structure viewers don't work for nucleotide

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 2.8.2
    • Fix Version/s: 2.9
    • Component/s: awt-gui
    • Labels:
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      Description

      As per TODO comment in JalviewJmolBinding.setJalviewColourScheme.
      Code tries to construct 'colour' command but only uses peptide residue names.
      These don't match the displayed residues (in JMol/Chimera) if the structure is nucleotide.
      Example: view 2GIS and use the Jalview Colour menu to Colour Purine/Pyrimidine (or anything else).
      Only the 'color white' part of the command takes effect - the model is left entirely white.

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            Assignee:
            gmungoc Mungo Carstairs
            Reporter:
            gmungoc Mungo Carstairs
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