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  1. Jalview
  2. JAL-1710

':' in pdbid passes validation in UI but results in exceptions on service API call

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.9
    • Component/s: pdbe
    • Labels:
      None
    • Urgency:
      Highest

      Description

      Using the dialog box to add a PDB ID to a sequence via the appropriate 'View structure' option, and entering '1xyz:aaa' results in exceptions like:

      Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: org.apache.solr.search.SyntaxError: Cannot parse '(pdb_id:1xqy:aaa:) AND molecule_sequence:['' TO *]': Encountered " ":" ": "" at line 1, column 12.

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          Issue Links

          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1711 allow PDB chain code to be specified when entering a specific PDB ID for a sequence

          • Major - Major loss of function.
          • Closed

            Activity

              People

              Assignee:
              tcnofoegbu Tochukwu Charles N Ofoegbu
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: