Details
-
Type: New Feature
-
Status: Open
-
Priority: Major
-
Resolution: Unresolved
-
Affects Version/s: None
-
Fix Version/s: None
-
Component/s: data retrieval services, na, Structures
-
Labels:
Description
rnacentral.org is the place to go to identify relationships for RNA molecules. 'Tight linkage' of RNA central and Jalview may allow an efficient way of discovering 3D structures, RNA products, or genomic-loci for any given nucleotide accession.
It should, at the very least, be possible to round-trip:
Single sequence:
M64709 -> locate PDB structure for RNA product (M64709.1)
Alignment:
Import RFAM seed alignment: RF00010
View structures: resolves xrefs via RnaCentral between ENA and PDB
-> Open structures and also annotate sequences by their secondary structure.
It should, at the very least, be possible to round-trip:
Single sequence:
M64709 -> locate PDB structure for RNA product (M64709.1)
Alignment:
Import RFAM seed alignment: RF00010
View structures: resolves xrefs via RnaCentral between ENA and PDB
-> Open structures and also annotate sequences by their secondary structure.
Attachments
Issue Links
- related with
-
JAL-886 fetching EMBL reference for an RNA sequence results fails with a sequence mismatch
- In Progress