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  1. Jalview
  2. JAL-1708

resolve cross-references between RNA, DNA, RFAM and 3D coordinates via RNACentral

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      Description

      rnacentral.org is the place to go to identify relationships for RNA molecules. 'Tight linkage' of RNA central and Jalview may allow an efficient way of discovering 3D structures, RNA products, or genomic-loci for any given nucleotide accession.

      It should, at the very least, be possible to round-trip:

      Single sequence:
      M64709 -> locate PDB structure for RNA product (M64709.1)

      Alignment:
      Import RFAM seed alignment: RF00010
      View structures: resolves xrefs via RnaCentral between ENA and PDB
      -> Open structures and also annotate sequences by their secondary structure.

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Updated: