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  1. Jalview
  2. JAL-1680

more efficient group conservation calculation

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: analysis
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      Description

      Actions that create groups such as a tree cut operation currently have to calculate conservations for each new group, which can cause perceptible delay.

      Any decision as to whether group conservations are needed needs to know about:

      * state of group consensus/conservation autoannotation display
      * apply to all groups checkbox
      * current global colourscheme

      If conservation is needed, then it has to be done before the groups are created *or* a visual delay is shown after the groups are created whilst an alignment calculation worker does it's thing.

      relevant jalview-dev thread:
      http://www.jalview.org/pipermail/jalview-dev/2015-March/thread.html#407

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              Assignee:
              jprocter Jim Procter
              Reporter:
              gmungoc Mungo Carstairs
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                Created:
                Updated: