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  1. Jalview
  2. JAL-1621

make retrieval of PDB/other sequence records faster

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
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      Description

      Retrieving accession records for large numbers of IDs can be slow, particularly with PDB files which seem to take several seconds per accession to retrieve and parse. Ways should be explored to retrieve records in parallel, and/or bulk where possible.

      for PDB records, JAL-801 could be implemented for those who have PDB files as local mirrors, since it is trivial to search for a file in a directory that has a particular name.

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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              Created:
              Updated: