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  1. Jalview
  2. JAL-1618

Miscellaneous Embl feature qualifiers not retrieved

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    Details

    • Type: Bug
    • Status: Closed
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: 2.8.2
    • Fix Version/s: 2.9
    • Component/s: data retrieval services
    • Labels:
      None
    • Environment:
      All
    • Urgency:
      Not urgent

      Description

      Code in EmblEntry.parseCodingFeature() at line 690 incorrectly uses hashtable entry values instead of keys. As a result any 'miscellaneous' <qualifier> elements under <feature name="CDS"> would be ignored (not added to the SequenceFeature for the coding region).
      Fix: change vals.elements() to vals.keys().

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          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-653 import of alignments via gff3 cigar annotation

          • Major - Major loss of function.
          • In Progress

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              Assignee:
              gmungoc Mungo Carstairs
              Reporter:
              gmungoc Mungo Carstairs
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                Dates

                Created:
                Updated:
                Resolved: