Details
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Type:
Bug
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Status: Closed
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Priority:
Critical
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Resolution: Fixed
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Affects Version/s: 2.8.2
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Fix Version/s: 2.8.2
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Component/s: file format issue, na
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Labels:None
Description
This looks like a side effect of employing VARNA's parser to processes RNA secondary structure annotation - a mechanism that was merged in along with the code for handling sugar edge interactions and pseudoknots that Anne Menard implemented back in 2012.
Our stockholm test file - examples/RF00031_folded.stk when imported doesn't yield a valid RNA secondary structure line (as evidenced by the amber blob that is shown in column 44). This file worked in version 2.8 and 2.8.1, so something is screwy.
Suggest a test case is created to see what's going on here.
Our stockholm test file - examples/RF00031_folded.stk when imported doesn't yield a valid RNA secondary structure line (as evidenced by the amber blob that is shown in column 44). This file worked in version 2.8 and 2.8.1, so something is screwy.
Suggest a test case is created to see what's going on here.
Attachments
Issue Links
- related with
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JAL-1140 Support for parsing RNAML
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- Closed
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