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  1. Jalview
  2. JAL-1512

Trees/PCA based on physicochemical properties of amino acids

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    Details

    • Type: Improvement
    • Status: Being documented
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.8.1, 2.8.2, 2.8.2b1, 2.9, 2.11.0
    • Fix Version/s: None
    • Component/s: analysis
    • Labels:

      Description

      Build trees and PCA based on the physicochemical properties of different amino acids.

      Sometimes its useful to cluster based on physicochemical property distributions rather than similarity matrices. Although not phylogenetically informative, clustering based on polarity/size/etc allows interaction sites, etc to be more effectively analysed.

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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                Dates

                Created:
                Updated: