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  1. Jalview
  2. JAL-1492

annotation colourscheme cannot be applied to alignment with groups

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 2.8.0b1
    • Fix Version/s: 2.8.1
    • Component/s: renderer
    • Labels:
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      Description

      Jalview throws a stack of exceptions when attempting to apply or modify a colour-by-alignment colourscheme when 'Apply colourscheme to all groups' is selected and groups exist on the alignment.

      Exceptions are like:
      java.lang.InstantiationException: jalview.schemes.AnnotationColourGradient
      at java.lang.Class.newInstance0(Class.java:342)
      at java.lang.Class.newInstance(Class.java:310)
      at jalview.viewmodel.AlignmentViewport.setGlobalColourScheme(AlignmentViewport.java:232)
      at jalview.gui.AnnotationColourChooser.changeColour(AnnotationColourChooser.java:560)
      at jalview.gui.AnnotationColourChooser.<init>(AnnotationColourChooser.java:176)
      at jalview.gui.AlignFrame.annotationColour_actionPerformed(AlignFrame.java:3200)
      at jalview.jbgui.GAlignFrame$97.actionPerformed(GAlignFrame.java:1525)
      at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)

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            Assignee:
            jprocter James Procter
            Reporter:
            jprocter James Procter
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              Dates

              Created:
              Updated:
              Resolved: