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  1. Jalview
  2. JAL-1483

feature based tree/pca calculation

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    Details

    • Type: New Feature
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: 2.9, 2.10.2
    • Fix Version/s: 2.9, 2.10.2
    • Component/s: analysis
    • Labels:
      None

      Description

      Allow the user to compute trees and PCAs based on the similarity of displayed features on each sequence in the alignment.

        Attachments

          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-2647 Storage of input data + score model/parameters for tree and PCA

          • Major - Major loss of function.
          • In Progress
          depends on

          Bug - A problem which impairs or prevents the functions of the product. JAL-2075 Tree by sequence feature similarity doesn't exclude features in hidden columns

          • Major - Major loss of function.
          • Closed

          Bug - A problem which impairs or prevents the functions of the product. JAL-1538 Can't create a feature with 'null' or empty group with 'create feature' dialog

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

          Task - A task that needs to be done. JAL-2403 refactor ScoreMatrix.computePairwiseScores(String[])

          • Major - Major loss of function.
          • Closed
          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1632 Dialog to create/edit tree calculation settings

          • Blocker - Blocks development and/or testing work, production could not run.
          • Closed

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: