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  1. Jalview
  2. JAL-1391

extend per-sequence JWS2 annotator to support selected range on visible sequence annotation

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: JWS-GUI, JWS2
    • Labels:
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      Description

      The JPred service predicts on the selected range of the currently visible portions of a sequence or alignment. However, Disorder predictors in v2.8 predict on the whole sequence length, regardless of visibility, etc.

      The user may wish to have the option of predicting on only the selected portion of a sequence, excluding hidden regions. This capability is also necessary for replacing the legacy JPred service with the new JPred jabaws service.

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          Issue Links

          related with

          Task - A task that needs to be done. JAL-1601 Migrate the JABA 2 JPred client to directly call JPred as a REST service

          • Critical - Crashes, loss of data, severe memory leak.
          • Being tested

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1164 Allow disorder predictions to be made on the current selection (or visible selection) in the same way that JPred works

          • Critical - Crashes, loss of data, severe memory leak.
          • Resolved

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1504 Merge annotation lines produced by predictions on different regions of a sequence

          • Major - Major loss of function.
          • Open

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1505 Warn user when input sequences were too short for a sequence analysis service

          • Major - Major loss of function.
          • Open

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              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: