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  1. Jalview
  2. JAL-1339

Support translation of codons containing ambiguous nucleotides

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.8, 2.8.0b1
    • Fix Version/s: None
    • Component/s: analysis, na
    • Labels:
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      Description

      Ambiguous bases are not uncommon in nucleotide sequences.
      see attachment at this comment:
      http://issues.jalview.org/browse/JAL-1312?focusedCommentId=13020&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-13020

      Currently, NA ambiguity codes, such as Y and K cause jalview to mistranslate sequences, because they are inconsistently treated as gaps by the translation algorithm.



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          Bug - A problem which impairs or prevents the functions of the product. JAL-1312 Translation from DNA to Amino Acids fails

          • Critical - Crashes, loss of data, severe memory leak.
          • Resolved

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              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: