Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-1283

Problem with exporting image file

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.8
    • Fix Version/s: None
    • Component/s: printing and export
    • Labels:
      None
    • Environment:
      Mac OSX 10.5.8

      Description

      Hi,

      I've just installed Jalview 2.8 using InstallAnywhere, on Mac OSX 10.5.8. The input and output work fine with the main menu, but the alignment viewer window cannot write out files.

      I found these errors popping out in the console

      ERROR: uk.ac.vamsas.client.simpleclient.Lock - Error! Problems with IO when creating a lock on /Users/trang/.vamsas/sessions.obj.lck

      and these kinds of error in the top of output.txt (which is 180MB)

      Java version: 1.6.0_26
      x86_64 Mac OS X 10.5.8
      Error reading properties file: java.io.FileNotFoundException: /Users/trang/.jalview_properties (No such file or directory)
      Jalview Version: 2.8
      # INFO: Setting default net timeout to 30 seconds.
      WARN : jalview.bin.Jalview - Exception when discovering One Way services:
      java.io.FileNotFoundException: http://www.ebi.ac.uk/enfin-srv/envision2/pages/workflows.xml
          at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
          at java.net.URL.openStream(URL.java:1010)
          at jalview.ws.EnfinEnvision2OneWay.run(EnfinEnvision2OneWay.java:243)
          at java.lang.Thread.run(Thread.java:680)

      I've found those files (lock files and .jalview_properties) and they have permission to read and write for the current user. Do you have any suggestion about the possible cause and how to fix the problem? I think it is likely a problem specific to my machine but don't know where to start.

      Thanks,
      Trang

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            Assignee:
            jprocter Jim Procter
            Reporter:
            trang Trang Tran
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              Dates

              Created:
              Updated: