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  1. Jalview
  2. JAL-1207

widen support for sequence annotation import via stockholm files

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: file format issue
    • Labels:
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      Description

      Importing "non-standard" (a-ka non-secondary-structure) sequence annotations like the 'SA' row in the lines below are not currently supported:

      O83071/192-246 MTCRAQLIAVPRASSLAE..AIACAQKM....RVSRVPVYERS
      #=GR O83071/192-246 SA 999887756453524252..55152525....36463774777
      O83071/259-312 MQHVSAPVFVFECTRLAY..VQHKLRAH....SRAVAIVLDEY
      #=GR O83071/259-312 SS CCCCCHHHHHHHHHHHHH..EEEEEEEE....EEEEEEEEEEE

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          related with

          New Feature - A new feature of the product, which has yet to be developed. JAL-1199 Output in Stockholm format

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Closed

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              Assignee:
              jprocter James Procter
              Reporter:
              n.sherstneva Natasha Sherstneva
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                Dates

                Created:
                Updated: