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  1. Jalview
  2. JAL-1177

RNA secondary structure alignment annotation rows not propagated via dataset

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Blocker
    • Resolution: Fixed
    • Affects Version/s: 2.8
    • Fix Version/s: 2.8.1
    • Component/s: na
    • Labels:
      None

      Description

      If a set of sequences with RNA secondary structure annotation are aligned with one of the web services, they lose RNA secondary structure annotation, making it nearly impossible to use Jalview for interactive RNA alignment and analysis with existing structure data or predictions.

      The problem is that RNA secondary structure annotation is handled as an alignment scoped property, rather than a dataset scoped annotation - hence it is not recovered when the alignment result is imported into the desktop as a new alignment when the web service is finished.

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          Issue Links

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          Story - Created by Jira Software - do not edit or delete. Issue type for a user story. JAL-1305 Allow distinct sets of annotation for a sequence to be propagated and visually compared

          • Major - Major loss of function.
          • Open
          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-1044 currently displayed sequence name is not used when loading features on to alignment

          • Critical - Crashes, loss of data, severe memory leak.
          • Open

          Bug - A problem which impairs or prevents the functions of the product. JAL-905 sequence associated alignment annotation not added to an alignment is not saved to project

          • Major - Major loss of function.
          • Resolved

          Bug - A problem which impairs or prevents the functions of the product. JAL-878 Sequence associated secondary structure information in Stockholm files are not parsed

          • Minor - Minor loss of function, or other problem where easy workaround is present.
          • Resolved

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              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated:
                Resolved: