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  1. Jalview
  2. JAL-1142

fix up RNAML and PDB parsing to cope with nucleic acids as ligands

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    Details

    • Type: Bug
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: 2.8.2, 2.9
    • Fix Version/s: None
    • Component/s: file format issue, na, Structures
    • Labels:
      None

      Description

      Some RNA structures (e.g. SAM riboswitch) include nucleic acids as ligands. These are processed by RNA structure annotation tools like rnaview like any part of an RNA structure, but Jalview does not recognise ligands as part of the RNA chain.

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          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-674 display secondary structure of known structures on alignment

          • Major - Major loss of function.
          • Closed
          depends on

          Task - A task that needs to be done. JAL-2187 Test Jalview 2.10 with DockeRNA docker based RNA services

          • Major - Major loss of function.
          • Open

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
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                Dates

                Created:
                Updated: