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  1. Jalview
  2. JAL-1125

allow seqspace or Jalview variant of alignment PCA calculation

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    Details

    • Type: Improvement
    • Status: Resolved
    • Priority: Minor
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.8
    • Component/s: analysis
    • Labels:
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      Description

      This thread on Jalview-Discuss http://www.jalview.org/pipermail/jalview-discuss/2010-February/000303.html
      describes the difference between the PCA calculation that Jalview has 'traditionally' performed and the one described in the SeqSpace paper.

      It would be useful to have an option to switch between these two modes of calculation - so the user can decide which variant they'd prefer to use for analysis, or to explore differences between them.

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            Assignee:
            jprocter Jim Procter
            Reporter:
            jprocter Jim Procter
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