Uploaded image for project: 'Jalview'
  1. Jalview
  2. JAL-1109

jalview project does not store and retrieve the 'belowAlignment' flag for annotation

    XMLWordPrintable

    Details

    • Type: Improvement
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.8
    • Component/s: Datamodel, file format issue
    • Labels:
      None

      Description

      per-sequence positional annotation colouring relies on the belowAlignment flag which was present but not used in versions of Jalview prior to v2.8. The T-COFFEE colour scheme employs this flag to hide sequence scores shown as annotation rows, so it should be stored in the project file.

        Attachments

          Issue Links

          blocks

          New Feature - A new feature of the product, which has yet to be developed. JAL-1065 import and visualise T-COFFEE quality scores for an alignment

          • Major - Major loss of function.
          • Resolved
          related with

          Improvement - An improvement or enhancement to an existing feature or task. JAL-1110 extend project file to store calcId attribute for annotation on the alignment

          • Major - Major loss of function.
          • Resolved

            Activity

              People

              Assignee:
              jprocter James Procter
              Reporter:
              jprocter James Procter
              Votes:
              0 Vote for this issue
              Watchers:
              0 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: