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  1. Jalview
  2. JAL-1106

per-symbol value calculation for positional alignment score colourschemes

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    Details

    • Type: Improvement
    • Status: Open
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: analysis, renderer
    • Labels:
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      Description

      Alignment colourschemes that colour each position of each sequence according to some process suffer from the problem that they cannot be used to compute a colour for a particular symbol that can be used to render each symbol in a sequence logo derived from the alignment's sequence profile.

      A heuristic could be implemented to average over scores or applied colours in order to compute a reasonable colour for each symbol present in an alignment column. This could be done in a generic way, enabling sequence dependent colourschemes to behave more like simple zeroth order colourschemes.

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              Assignee:
              jprocter Jim Procter
              Reporter:
              jprocter Jim Procter
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                Created:
                Updated: